PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000568G0750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 295aa    MW: 31137.4 Da    PI: 4.6079
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000568G0750genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-2092142155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  PH01000568G0750  92 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRG 142
                      69********.**********88.....55*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-2992152No hitNo description
PfamPF008471.2E-1292142IPR001471AP2/ERF domain
PROSITE profilePS5103223.10393150IPR001471AP2/ERF domain
SMARTSM003806.0E-3793156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3093151IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2293152IPR016177DNA-binding domain
PRINTSPR003672.0E-1094105IPR001471AP2/ERF domain
PRINTSPR003672.0E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSRPRTVRIF WDDPDVTDSS CGEEGCGARR VGRMVRELPP APPPLVQTGS AAAGGLPEQC  60
SAGDGDRARR LAGGCTGARR RLAKGGSTAS STKFRGVRRR PWGKYAAEIR DPWRGVRVWL  120
GTFDTAEEAA RVYDSAAIQL RGPSATTNFS TSTNSAGAHD RVAAGYESGA ESSPAVSSPT  180
SVLRKIPSLA SLAEGNDDSE ARPGEPAAGC SLTVPEELGE FVPFEDAPVY ASSSFWDFEP  240
EAGFLYAEPS SPEAPWDASA ASAGAPWAAP LQENDYFQDL RDLFPLNPLP PAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1989155168ATERF1
3gcc_A1e-1989155168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644464.11e-163PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLJ3L2I61e-163J3L2I6_ORYBR; Uncharacterized protein
STRINGOB01G34420.11e-162(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-25cytokinin response factor 4